IL_7O7Y_276

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAAUG*CUCGC

Length

11 nucleotides

Bulged bases

7O7Y|1|B5|U|4634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_276 not in the Motif Atlas

Homologous match to IL_8GLP_171

Geometric discrepancy: 0.1936

The information below is about IL_8GLP_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|B5|G|4630
7O7Y|1|B5|A|4631
7O7Y|1|B5|A|4632
7O7Y|1|B5|A|4633
7O7Y|1|B5|U|4634
7O7Y|1|B5|G|4635
*
7O7Y|1|B5|C|4663
7O7Y|1|B5|U|4664
7O7Y|1|B5|C|4665
7O7Y|1|B5|G|4666
7O7Y|1|B5|C|4667

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein uL13