IL_7O7Z_003
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 7O7Z|1|A2|A|517
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3309
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
7O7Z|1|A2|C|37
7O7Z|1|A2|A|38
7O7Z|1|A2|A|39
7O7Z|1|A2|A|40
*
7O7Z|1|A2|U|515
7O7Z|1|A2|G|516
7O7Z|1|A2|A|517
7O7Z|1|A2|OMC|518
7O7Z|1|A2|G|519
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ax
- 40S ribosomal protein S24
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