IL_7O7Z_012

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|U|115
7O7Z|1|A2|OMU|116
7O7Z|1|A2|C|117
7O7Z|1|A2|C|118
7O7Z|1|A2|PSU|119
7O7Z|1|A2|U|120
7O7Z|1|A2|OMU|121
7O7Z|1|A2|G|122
*
7O7Z|1|A2|C|343
7O7Z|1|A2|A|344
7O7Z|1|A2|U|345
7O7Z|1|A2|U|346
7O7Z|1|A2|C|347
7O7Z|1|A2|G|348
7O7Z|1|A2|A|349

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11