IL_7O7Z_013

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

7O7Z|1|A2|C|142, 7O7Z|1|A2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|G|130
7O7Z|1|A2|U|140
7O7Z|1|A2|A|141
7O7Z|1|A2|C|142
7O7Z|1|A2|U|143
7O7Z|1|A2|U|144
*
7O7Z|1|A2|A|175
7O7Z|1|A2|U|176
7O7Z|1|A2|G|177
7O7Z|1|A2|C|178
7O7Z|1|A2|C|179
7O7Z|1|A2|G|180
7O7Z|1|A2|A|181
7O7Z|1|A2|C|182

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6