IL_7O7Z_016

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3653

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7O7Z|1|A2|C|188
7O7Z|1|A2|U|189
7O7Z|1|A2|G|190
7O7Z|1|A2|A|191
7O7Z|1|A2|C|192
*
7O7Z|1|A2|G|207
7O7Z|1|A2|G|208
7O7Z|1|A2|A|209
7O7Z|1|A2|PSU|210
7O7Z|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8