IL_7O7Z_021

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_021 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3395

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|A2|U|367
7O7Z|1|A2|U|368
7O7Z|1|A2|U|369
7O7Z|1|A2|C|370
7O7Z|1|A2|G|371
7O7Z|1|A2|A|372
*
7O7Z|1|A2|U|394
7O7Z|1|A2|G|395

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BR

60S ribosomal protein L19