IL_7O7Z_025

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

7O7Z|1|A2|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_025 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2704

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7O7Z|1|A2|U|496
7O7Z|1|A2|C|497
*
7O7Z|1|A2|G|507
7O7Z|1|A2|G|508
7O7Z|1|A2|A|509

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24