IL_7O7Z_028

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

7O7Z|1|A2|G|589

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_028 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1212

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7O7Z|1|A2|G|564
7O7Z|1|A2|A|565
7O7Z|1|A2|G|566
*
7O7Z|1|A2|C|586
7O7Z|1|A2|G|587
7O7Z|1|A2|A|588
7O7Z|1|A2|G|589
7O7Z|1|A2|G|590
7O7Z|1|A2|A2M|591
7O7Z|1|A2|U|592
7O7Z|1|A2|C|593

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)