IL_7O7Z_029

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_029 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2205

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

7O7Z|1|A2|U|567
7O7Z|1|A2|C|568
7O7Z|1|A2|C|569
7O7Z|1|A2|A|570
*
7O7Z|1|A2|U|582
7O7Z|1|A2|U|583
7O7Z|1|A2|A|584
7O7Z|1|A2|A|585

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24