IL_7O7Z_044

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)A*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|G|808
7O7Z|1|A2|A|809
7O7Z|1|A2|A|810
7O7Z|1|A2|A|811
7O7Z|1|A2|A|812
7O7Z|1|A2|A|813
7O7Z|1|A2|A|814
7O7Z|1|A2|PSU|815
7O7Z|1|A2|PSU|816
7O7Z|1|A2|A|817
*
7O7Z|1|A2|U|849
7O7Z|1|A2|A|850
7O7Z|1|A2|C|851
7O7Z|1|A2|C|852
7O7Z|1|A2|G|853
7O7Z|1|A2|C|854
7O7Z|1|A2|A|855
7O7Z|1|A2|G|856
7O7Z|1|A2|C|857

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ak

40S ribosomal protein S11

Chain Av

Ribosomal protein S15a