IL_7O7Z_049

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7O7Z|1|A2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_049 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1076

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7O7Z|1|A2|G|925
7O7Z|1|A2|G|926
7O7Z|1|A2|A|927
7O7Z|1|A2|C|928
*
7O7Z|1|A2|G|1015
7O7Z|1|A2|U|1016
7O7Z|1|A2|U|1017
7O7Z|1|A2|U|1018
7O7Z|1|A2|U|1019

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Am

uS15