IL_7O7Z_063
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGGA*U(PSU)G
- Length
- 7 nucleotides
- Bulged bases
- 7O7Z|1|A2|G|1208
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_063 not in the Motif Atlas
- Geometric match to IL_7A0S_044
- Geometric discrepancy: 0.2126
- The information below is about IL_7A0S_044
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
7O7Z|1|A2|C|1206
7O7Z|1|A2|G|1207
7O7Z|1|A2|G|1208
7O7Z|1|A2|A|1209
*
7O7Z|1|A2|U|1692
7O7Z|1|A2|PSU|1693
7O7Z|1|A2|G|1694
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Ribosomal protein eS26
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ab
- Ribosomal protein uS5
- Chain An
- 40S ribosomal protein uS11
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