IL_7O7Z_065

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_065 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2639

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7O7Z|1|A2|G|1223
7O7Z|1|A2|A|1224
7O7Z|1|A2|G|1225
*
7O7Z|1|A2|U|1643
7O7Z|1|A2|PSU|1644
7O7Z|1|A2|C|1645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain AT

Transfer RNA; tRNA

Chain Ae

Ribosomal protein S5

Chain Ap

uS9