IL_7O7Z_079

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_079 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.3717

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

7O7Z|1|A2|U|1401
7O7Z|1|A2|A|1402
7O7Z|1|A2|A|1403
*
7O7Z|1|A2|U|1445
7O7Z|1|A2|PSU|1446
7O7Z|1|A2|A|1447

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

uS9

Chain At

40S ribosomal protein uS10