3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CG*CGG
Length
5 nucleotides
Bulged bases
7O7Z|1|A2|G|1429
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_082 not in the Motif Atlas
Geometric match to IL_5J7L_019
Geometric discrepancy: 0.2964
The information below is about IL_5J7L_019
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

7O7Z|1|A2|C|1413
7O7Z|1|A2|G|1414
*
7O7Z|1|A2|C|1428
7O7Z|1|A2|G|1429
7O7Z|1|A2|G|1430

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ap
uS9
Chain As
Ribosomal protein eS19

Coloring options:


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