IL_7O7Z_082
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CG*CGG
- Length
- 5 nucleotides
- Bulged bases
- 7O7Z|1|A2|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_082 not in the Motif Atlas
- Geometric match to IL_5J7L_019
- Geometric discrepancy: 0.2964
- The information below is about IL_5J7L_019
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
7O7Z|1|A2|C|1413
7O7Z|1|A2|G|1414
*
7O7Z|1|A2|C|1428
7O7Z|1|A2|G|1429
7O7Z|1|A2|G|1430
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ap
- uS9
- Chain As
- Ribosomal protein eS19
Coloring options: