IL_7O7Z_089

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_089 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0815

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7O7Z|1|A2|G|1703
7O7Z|1|A2|OMC|1704
7O7Z|1|A2|C|1705
7O7Z|1|A2|C|1706
*
7O7Z|1|A2|G|1830
7O7Z|1|A2|U|1831
7O7Z|1|A2|A|1832
7O7Z|1|A2|6MZ|1833
7O7Z|1|A2|C|1834

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

Coronavirus frameshifting stimulation element

Chain AT

Transfer RNA; tRNA

Chain Az

60s ribosomal protein l41

Chain B5

Large subunit ribosomal RNA; LSU rRNA