IL_7O7Z_101

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_101 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.109

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7O7Z|1|A2|C|1842
7O7Z|1|A2|4AC|1843
7O7Z|1|A2|G|1844
*
7O7Z|1|A2|C|1857
7O7Z|1|A2|G|1858
7O7Z|1|A2|G|1859

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Ribosomal protein eS26

Chain An

40S ribosomal protein uS11

Chain Az

60s ribosomal protein l41