IL_7O7Z_111
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AU*AAAUGU
- Length
- 8 nucleotides
- Bulged bases
- 7O7Z|1|B5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_111 not in the Motif Atlas
- Homologous match to IL_8C3A_007
- Geometric discrepancy: 0.185
- The information below is about IL_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
7O7Z|1|B5|A|121
7O7Z|1|B5|U|122
*
7O7Z|1|B5|A|147
7O7Z|1|B5|A|148
7O7Z|1|B5|A|149
7O7Z|1|B5|U|150
7O7Z|1|B5|G|151
7O7Z|1|B5|U|152
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BG
- Ribosomal protein eL8
- Chain BN
- Ribosomal protein L15
- Chain Bh
- uL29
Coloring options: