3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
7O7Z|1|B5|U|200
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_117 not in the Motif Atlas
Homologous match to IL_8C3A_013
Geometric discrepancy: 0.2011
The information below is about IL_8C3A_013
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7O7Z|1|B5|G|199
7O7Z|1|B5|U|200
7O7Z|1|B5|C|201
*
7O7Z|1|B5|G|214
7O7Z|1|B5|C|215

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BY
Ribosomal protein L26

Coloring options:


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