3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_122 not in the Motif Atlas
Homologous match to IL_5TBW_015
Geometric discrepancy: 0.0681
The information below is about IL_5TBW_015
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7O7Z|1|B5|G|415
7O7Z|1|B5|U|416
7O7Z|1|B5|G|417
7O7Z|1|B5|A|418
7O7Z|1|B5|A|419
7O7Z|1|B5|A|420
7O7Z|1|B5|C|421
*
7O7Z|1|B8|G|13
7O7Z|1|B8|U|14
7O7Z|1|B8|G|15
7O7Z|1|B8|G|16
7O7Z|1|B8|A|17
7O7Z|1|B8|U|18
7O7Z|1|B8|C|19

Current chains

Chain B5
28S rRNA
Chain B8
5.8S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BK
Replicase polyprotein 1ab
Chain BP
uL22
Chain Be
eL32

Coloring options:


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