IL_7O7Z_133

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCUCG*CC

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|U|504, 7O7Z|1|B5|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_133 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1358

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7O7Z|1|B5|G|501
7O7Z|1|B5|U|502
7O7Z|1|B5|C|503
7O7Z|1|B5|U|504
7O7Z|1|B5|C|505
7O7Z|1|B5|G|506
*
7O7Z|1|B5|C|648
7O7Z|1|B5|C|649

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BQ

Ribosomal Protein eL18