IL_7O7Z_140

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

7O7Z|1|B5|A|831, 7O7Z|1|B5|A|834, 7O7Z|1|B5|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|A|726
7O7Z|1|B5|A|727
7O7Z|1|B5|G|728
7O7Z|1|B5|G|729
*
7O7Z|1|B5|C|827
7O7Z|1|B5|A|828
7O7Z|1|B5|G|829
7O7Z|1|B5|C|830
7O7Z|1|B5|A|831
7O7Z|1|B5|G|832
7O7Z|1|B5|C|833
7O7Z|1|B5|A|834
7O7Z|1|B5|G|835
7O7Z|1|B5|C|836
7O7Z|1|B5|U|837

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein eL20