IL_7O7Z_141

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|C|732, 7O7Z|1|B5|C|733, 7O7Z|1|B5|C|823, 7O7Z|1|B5|C|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_141 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3474

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7O7Z|1|B5|C|731
7O7Z|1|B5|C|732
7O7Z|1|B5|C|733
7O7Z|1|B5|G|734
*
7O7Z|1|B5|C|822
7O7Z|1|B5|C|823
7O7Z|1|B5|C|824
7O7Z|1|B5|G|825

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14