IL_7O7Z_152

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCG*CGC

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|U|1132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_152 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.3274

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7O7Z|1|B5|G|1131
7O7Z|1|B5|U|1132
7O7Z|1|B5|C|1133
7O7Z|1|B5|G|1134
*
7O7Z|1|B5|C|1206
7O7Z|1|B5|G|1207
7O7Z|1|B5|C|1208

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bb

60S ribosomal protein L29