IL_7O7Z_154

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|C|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_154 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2288

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

7O7Z|1|B5|G|1304
7O7Z|1|B5|G|1305
*
7O7Z|1|B5|C|1320
7O7Z|1|B5|G|1321
7O7Z|1|B5|C|1322
7O7Z|1|B5|C|1323

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BL

Ribosomal protein eL13

Chain BN

Ribosomal protein L15