IL_7O7Z_161

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

7O7Z|1|B5|A|1605, 7O7Z|1|B5|G|1609

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|1475
7O7Z|1|B5|C|1476
7O7Z|1|B5|OMG|1477
7O7Z|1|B5|A|1478
7O7Z|1|B5|A2M|1479
7O7Z|1|B5|A|1480
7O7Z|1|B5|G|1481
*
7O7Z|1|B5|C|1603
7O7Z|1|B5|U|1604
7O7Z|1|B5|A|1605
7O7Z|1|B5|G|1606
7O7Z|1|B5|U|1607
7O7Z|1|B5|A|1608
7O7Z|1|B5|G|1609
7O7Z|1|B5|C|1610
7O7Z|1|B5|U|1611
7O7Z|1|B5|G|1612

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BL

Ribosomal protein eL13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bj

Ribosomal protein L37