IL_7O7Z_164

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_164 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0707

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7O7Z|1|B5|C|1506
7O7Z|1|B5|G|1507
7O7Z|1|B5|A|1508
7O7Z|1|B5|A|1509
7O7Z|1|B5|G|1510
*
7O7Z|1|B5|U|1527
7O7Z|1|B5|G|1528
7O7Z|1|B5|G|1529
7O7Z|1|B5|A|1530
7O7Z|1|B5|G|1531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BR

60S ribosomal protein L19

Chain Bp

eL43