IL_7O7Z_170

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUCGCAACCCCG*CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|1649
7O7Z|1|B5|U|1650
7O7Z|1|B5|C|1651
7O7Z|1|B5|G|1652
7O7Z|1|B5|C|1653
7O7Z|1|B5|A|1654
7O7Z|1|B5|A|1655
7O7Z|1|B5|C|1656
7O7Z|1|B5|C|1657
7O7Z|1|B5|C|1658
7O7Z|1|B5|C|1659
7O7Z|1|B5|G|1660
*
7O7Z|1|B5|C|1780
7O7Z|1|B5|G|1781

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30

Chain BQ

Ribosomal Protein eL18

Chain BT

eL21

Chain Bb

60S ribosomal protein L29