IL_7O7Z_172
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGGUAAA*UU(PSU)AAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Z|1|B5|C|1671
7O7Z|1|B5|G|1672
7O7Z|1|B5|G|1673
7O7Z|1|B5|U|1674
7O7Z|1|B5|A|1675
7O7Z|1|B5|A|1676
7O7Z|1|B5|A|1677
*
7O7Z|1|B5|U|1729
7O7Z|1|B5|U|1730
7O7Z|1|B5|PSU|1731
7O7Z|1|B5|A|1732
7O7Z|1|B5|A|1733
7O7Z|1|B5|A|1734
7O7Z|1|B5|U|1735
7O7Z|1|B5|G|1736
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BF
- Ribosomal Protein uL30
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- Ribosomal protein eL20
- Chain BT
- eL21
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