IL_7O7Z_175

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_175 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3815

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|G|1692
7O7Z|1|B5|U|1693
7O7Z|1|B5|C|1694
7O7Z|1|B5|U|1695
7O7Z|1|B5|U|1696
*
7O7Z|1|B5|A|1714
7O7Z|1|B5|A|1715
7O7Z|1|B5|C|1716

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10