IL_7O7Z_180
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_180 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1249
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
7O7Z|1|B5|C|1850
7O7Z|1|B5|G|1851
7O7Z|1|B5|C|1852
7O7Z|1|B5|C|1853
7O7Z|1|B5|C|1854
7O7Z|1|B5|G|1855
7O7Z|1|B5|A|1856
7O7Z|1|B5|U|1857
*
7O7Z|1|B5|G|2003
7O7Z|1|B5|G|2004
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BF
- Ribosomal Protein uL30
- Chain BO
- Ribosomal protein uL13
- Chain BS
- Ribosomal protein eL20
- Chain Bf
- eL33
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