IL_7O7Z_181

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

7O7Z|1|B5|G|1858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_181 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3953

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7O7Z|1|B5|U|1857
7O7Z|1|B5|G|1858
7O7Z|1|B5|C|1859
*
7O7Z|1|B5|G|2002
7O7Z|1|B5|G|2003

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BO

Ribosomal protein uL13

Chain BS

Ribosomal protein eL20

Chain Bf

eL33