IL_7O7Z_195
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(OMU)GAAC*GAAC
- Length
- 10 nucleotides
- Bulged bases
- 7O7Z|1|B5|A|2271
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_195 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.3589
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
7O7Z|1|B5|G|2257
7O7Z|1|B5|OMU|2258
7O7Z|1|B5|G|2259
7O7Z|1|B5|A|2260
7O7Z|1|B5|A|2261
7O7Z|1|B5|C|2262
*
7O7Z|1|B5|G|2270
7O7Z|1|B5|A|2271
7O7Z|1|B5|A|2272
7O7Z|1|B5|C|2273
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain BR
- 60S ribosomal protein L19
- Chain Bl
- eL39
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