3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
G(OMU)GAAC*GAAC
Length
10 nucleotides
Bulged bases
7O7Z|1|B5|A|2271
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_195 not in the Motif Atlas
Homologous match to IL_8C3A_066
Geometric discrepancy: 0.3589
The information below is about IL_8C3A_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93630.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
4

Unit IDs

7O7Z|1|B5|G|2257
7O7Z|1|B5|OMU|2258
7O7Z|1|B5|G|2259
7O7Z|1|B5|A|2260
7O7Z|1|B5|A|2261
7O7Z|1|B5|C|2262
*
7O7Z|1|B5|G|2270
7O7Z|1|B5|A|2271
7O7Z|1|B5|A|2272
7O7Z|1|B5|C|2273

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BK
Replicase polyprotein 1ab
Chain BP
uL22
Chain BR
60S ribosomal protein L19
Chain Bl
eL39

Coloring options:


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