IL_7O7Z_223
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_223 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.3638
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7O7Z|1|B5|G|3442
7O7Z|1|B5|A|3443
7O7Z|1|B5|A|3444
7O7Z|1|B5|U|3445
7O7Z|1|B5|G|3446
*
7O7Z|1|B5|C|3471
7O7Z|1|B5|G|3472
7O7Z|1|B5|C|3473
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- E-site tRNA
- Chain Aa
- 40S ribosomal protein S3a
- Chain BA
- Ribosomal protein uL2
Coloring options: