IL_7O7Z_224

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AA(PSU)GAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|G|3446
7O7Z|1|B5|PSU|3447
7O7Z|1|B5|C|3448
7O7Z|1|B5|A|3449
7O7Z|1|B5|A2M|3450
7O7Z|1|B5|A|3451
7O7Z|1|B5|G|3452
7O7Z|1|B5|U|3453
*
7O7Z|1|B5|A|3464
7O7Z|1|B5|A|3465
7O7Z|1|B5|PSU|3466
7O7Z|1|B5|G|3467
7O7Z|1|B5|A|3468
7O7Z|1|B5|A|3469
7O7Z|1|B5|G|3470
7O7Z|1|B5|C|3471

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain BA

Ribosomal protein uL2

Chain Bi

60S ribosomal protein L36

Chain Bo

eL42