3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_227 not in the Motif Atlas
Homologous match to IL_5TBW_089
Geometric discrepancy: 0.0966
The information below is about IL_5TBW_089
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

7O7Z|1|B5|G|3512
7O7Z|1|B5|C|3513
*
7O7Z|1|B5|G|3543
7O7Z|1|B5|C|3544
7O7Z|1|B5|A|3545
7O7Z|1|B5|U|3546

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain AT
Transfer RNA; tRNA
Chain Az
60s ribosomal protein l41

Coloring options:


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