IL_7O7Z_236

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7O7Z|1|B5|G|3929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_236 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0985

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7O7Z|1|B5|U|3659
7O7Z|1|B5|A|3660
7O7Z|1|B5|G|3661
*
7O7Z|1|B5|U|3927
7O7Z|1|B5|G|3928
7O7Z|1|B5|G|3929
7O7Z|1|B5|G|3930

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain BA

Ribosomal protein uL2

Chain BN

Ribosomal protein L15

Chain Bo

eL42