IL_7O7Z_237

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

A(OMG)A*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_237 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1055

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7O7Z|1|B5|A|3675
7O7Z|1|B5|OMG|3676
7O7Z|1|B5|A|3677
*
7O7Z|1|B5|U|3796
7O7Z|1|B5|U|3797
7O7Z|1|B5|U|3798

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Bi

60S ribosomal protein L36