IL_7O7Z_242

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

7O7Z|1|B5|C|3824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_242 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.3964

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7O7Z|1|B5|G|3823
7O7Z|1|B5|C|3824
7O7Z|1|B5|G|3825
*
7O7Z|1|B5|C|3840
7O7Z|1|B5|U|3841

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain BA

Ribosomal protein uL2

Chain BG

Ribosomal protein eL8

Chain Bg

60S ribosomal protein L34