IL_7O7Z_249

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGC*GC

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|G|4095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_249 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2039

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7O7Z|1|B5|G|4093
7O7Z|1|B5|A|4094
7O7Z|1|B5|G|4095
7O7Z|1|B5|C|4096
*
7O7Z|1|B5|G|4110
7O7Z|1|B5|C|4111

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain BQ

Ribosomal Protein eL18

Chain Ba

60S ribosomal protein L27a

Chain Bo

eL42