IL_7O7Z_253

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_253 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1439

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7O7Z|1|B5|C|4158
7O7Z|1|B5|C|4159
7O7Z|1|B5|A|4160
7O7Z|1|B5|A|4161
7O7Z|1|B5|G|4162
*
7O7Z|1|B5|C|4172
7O7Z|1|B5|G|4173
7O7Z|1|B5|A|4174
7O7Z|1|B5|C|4175
7O7Z|1|B5|G|4176

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

60S ribosomal protein L40