IL_7O7Z_256

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|A|4264, 7O7Z|1|B5|C|4265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_256 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.0953

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7O7Z|1|B5|C|4204
7O7Z|1|B5|U|4205
*
7O7Z|1|B5|A|4263
7O7Z|1|B5|A|4264
7O7Z|1|B5|C|4265
7O7Z|1|B5|G|4266

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein uL13

Chain BV

Ribosomal protein L23