IL_7O7Z_262

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_262 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2403

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7O7Z|1|B5|A|4281
7O7Z|1|B5|OMC|4282
7O7Z|1|B5|C|4283
*
7O7Z|1|B5|G|4295
7O7Z|1|B5|G|4296
7O7Z|1|B5|U|4297

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BA

Ribosomal protein uL2

Chain BI

60S ribosomal protein L10