IL_7O7Z_267

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_267 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3533

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7O7Z|1|B5|C|4328
7O7Z|1|B5|C|4329
7O7Z|1|B5|A|4330
7O7Z|1|B5|U|4331
*
7O7Z|1|B5|A|4463
7O7Z|1|B5|G|4464
7O7Z|1|B5|G|4465
7O7Z|1|B5|C|4466
7O7Z|1|B5|G|4467

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein uL13