IL_7O7Z_272

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7O7Z|1|B5|A|4402, 7O7Z|1|B5|U|4403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_272 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2457

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7O7Z|1|B5|U|4387
7O7Z|1|B5|U|4388
*
7O7Z|1|B5|A|4401
7O7Z|1|B5|A|4402
7O7Z|1|B5|U|4403
7O7Z|1|B5|G|4404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bd

eL31