IL_7O7Z_288

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_288 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1057

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7O7Z|1|B5|A|4753
7O7Z|1|B5|G|4754
7O7Z|1|B5|A|4755
7O7Z|1|B5|G|4756
*
7O7Z|1|B5|C|4771
7O7Z|1|B5|G|4772
7O7Z|1|B5|A|4773
7O7Z|1|B5|U|4774

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BR

60S ribosomal protein L19