IL_7O7Z_299
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (OMU)CC(PSU)U(OMU)*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_299 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.1952
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29223.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O7Z|1|A2|OMU|116
7O7Z|1|A2|C|117
7O7Z|1|A2|C|118
7O7Z|1|A2|PSU|119
7O7Z|1|A2|U|120
7O7Z|1|A2|OMU|121
*
7O7Z|1|A2|A|344
7O7Z|1|A2|U|345
7O7Z|1|A2|U|346
7O7Z|1|A2|C|347
7O7Z|1|A2|G|348
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Ah
- 40S ribosomal protein S8
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