IL_7O7Z_305

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUCUCGGCG*CCCGAAG

Length

17 nucleotides

Bulged bases

7O7Z|1|A2|U|748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|C|746
7O7Z|1|A2|C|747
7O7Z|1|A2|U|748
7O7Z|1|A2|C|749
7O7Z|1|A2|U|750
7O7Z|1|A2|C|751
7O7Z|1|A2|G|752
7O7Z|1|A2|G|753
7O7Z|1|A2|C|754
7O7Z|1|A2|G|755
*
7O7Z|1|A2|C|791
7O7Z|1|A2|C|792
7O7Z|1|A2|C|793
7O7Z|1|A2|G|794
7O7Z|1|A2|A|795
7O7Z|1|A2|A|796
7O7Z|1|A2|G|797

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ag

40S ribosomal protein S7

Chain Ak

40S ribosomal protein S11