IL_7O7Z_311

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGACAGGA(OMU)UG*CUCGAUUCC

Length

20 nucleotides

Bulged bases

7O7Z|1|A2|G|1286, 7O7Z|1|A2|U|1316

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|G|1281
7O7Z|1|A2|G|1282
7O7Z|1|A2|A|1283
7O7Z|1|A2|C|1284
7O7Z|1|A2|A|1285
7O7Z|1|A2|G|1286
7O7Z|1|A2|G|1287
7O7Z|1|A2|A|1288
7O7Z|1|A2|OMU|1289
7O7Z|1|A2|U|1290
7O7Z|1|A2|G|1291
*
7O7Z|1|A2|C|1310
7O7Z|1|A2|U|1311
7O7Z|1|A2|C|1312
7O7Z|1|A2|G|1313
7O7Z|1|A2|A|1314
7O7Z|1|A2|U|1315
7O7Z|1|A2|U|1316
7O7Z|1|A2|C|1317
7O7Z|1|A2|C|1318

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Aj

eS10

Chain Al

40S ribosomal protein S12