IL_7O7Z_315
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (4AC)G*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 7O7Z|1|A2|A|1490
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_315 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1331
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
7O7Z|1|A2|4AC|1338
7O7Z|1|A2|G|1339
*
7O7Z|1|A2|C|1489
7O7Z|1|A2|A|1490
7O7Z|1|A2|OMG|1491
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ab
- Ribosomal protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- uS9
- Chain At
- 40S ribosomal protein uS10
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